Molecular detection of Herpes simplex virus 1 and 2 and VZV
Microbiology
Virology
PCR
○ BAL (HSV only)
○ CSF
○ Conjunctival swab
○ Oral washings (HSV only)
○ Other sterile body fluids
○ Vesicle/Lesion swab
○ Plasma
○ Ocular fluid
Other Information
○ HSV and VZV PCR on blood will need approval for patient populations other than neonates, transplant and patient at PMH.
○ Plasma: EDTA tube (lavender top)
○ BAL, CSF, oral washing, other sterile body fluids/tissue: sterile container
○ Eye or lesion swab/corneal scrapings: single swab in viral transport medium
Plasma:
○ Decontaminate skin with 70% alcohol followed by iodine or chlorhexidine, collect at least 5 mL of blood in appropriate container
○ neonates: a minimum of 0.5 mL; if ordered as part of a TORCH screen, 2.5 mL of blood is sufficient for all serology tests
BAL
○ Pass bronchoscope transnasally or transorally (if patient is not intubated) or via endotracheal tube (if patient is intubated). Instill a large volume of 0.85% sterile saline (nonbacteriostatic) into the airway lumen. Discard the initial fluid recovered (likely contaminated). Collect approximately remaining fluid in a clean, sterile container via suction.
CSF
○ Decontaminate skin, collect at least 0.5 mL of CSF by lumbar puncture into sterile container
Corneal scraping
○ Corneal surfaces should be rinsed thoroughly with normal saline to remove anaesthetic prior to collecting specimen
○ Use a Kimura scalpel to scrape across the ulcer using short firm strokes in one direction. Obtain 3 to 5 scrapings per cornea. Avoid contact with eyelids/eyelashes. Place scrapings into viral transport media
Conjunctival or vesicle/lesion swab
○ Conjunctival surfaces should be rinsed thoroughly with normal saline to remove anaesthetic prior to collecting specimen. Roll a sterile pre-moistened swab over the conjunctiva and place in transport medium
○ For lesions/vesicles, de-roof vesicle to remove crust and swab to express serous exudate.
Oral washings
○ Rinse mouth with small amount of saline ensuring to swish and gargle with solution. Collect saliva and washings in sterile container
Other sterile body fluids or tissues
○ Collect body fluids or tissues via fine needle aspiration, punch biopsy of lesion and place in sterile container
○ Label specimen container. Place specimens in biohazard bag and seal.
○ Specimens should be stored and transported to the UHN/SH Microbiology Laboratory at refrigeration temperature (2-8˚C) or on ice immediately after collection
○ UHN/SH Microbiology Laboratory will perform molecular testing in house.